Research Grants
- Predicting hemolytic peptides using machine learning methods with two-stage optimization. 以兩階段最佳化機器學習方法預測溶血毒性胜肽。NSTC 112-2221-E-468-019 (國科會)
- Clinical record deidentification and temporal normalization for AI Cup. 臨床病例去識別化與時間資訊正規化競賽暨標註資料蒐集計畫。Artificial Intelligence Competition and labeled data acqUisition Project (AI Cup)/Ministry of Education. 2023. (教育部)
- Construction of optimized machine learning predictor for VHH paratope prediction. 建構適用於VHH的最佳化paratope機器學習預測方法。Industry-Academia Cooperative Research Program with AnTaimmu BioMed Corp. 2023. (產學計劃-- 安肽生醫)
- Improving isobaric labeling quantitation accuracy with artificial intelligence and data-driven approaches 使用人工智慧以及資料導向方法以提升標記化蛋白質體定量準確性。MOST 110-2222-E-468-003 (科計部)
Honors
- 指導學生游荏捷獲得亞大生醫系「112年畢業專題競賽」第二名 2024/03. 題目:Constructing a VHH paratope predictor using optimized machine learning models
- 指導學生蔡敦竹、楊景臣獲得亞大生醫系「112年畢業專題競賽」產業委員獎 (僅取一名) 2024/03. 題目:Constructing hybrid quantitation algorithms for isobaric labeling proteomics
- 指導學生「陳思涵、郭邵淳」獲得亞大生醫系「畢業專題競賽」並列第一名, 題目:Sequence-based prediction of tumor T-cell antigen, 2023/02
- 指導學生「倪寬、游荏捷」獲得亞大生醫系「畢業專題競賽」並列第一名,題目:Using machine learning methods to develop a sequence-based prediction model for hemolytic peptides, 2023/02
- 指導學生榮獲亞洲大學 110學年度APP程式設計競賽,醫學暨健康學院第一名,題目:認識自己一下吧,學生姓名:黃詠郁(心理系)
- 指導學生榮獲亞洲大學 110學年度APP程式設計競賽,管理學院第二名,題目:酒的小知識,學生姓名:張雅絜(休憩系)
- 指導學生榮獲亞洲大學 110學年度APP程式設計競賽,管理學院第三名,題目:小酒館,學生姓名:劉育廷(休憩系)
Academic Activities
Invited Talks and Seminars
- Computational proteomics and its application to cancer tissue data analysis, Taiwan Joint Commission of Precision Medicine (台灣精準醫療品質策進會), Aug. 26, 2022.
- Bioinformatics and data science for cancer proteomics research, Department of Computer Science and Information Engineering, Asia University, Apr. 8, 2021.
- Automatic proteomics data analysis and isobaric labeling quantitation using WinProphet and Multi-Q 2, Bioinformatics Training Courses of Life Science Library, Academia Sinica, Apr. 7, 2021. (including hands-on training)
- Computational proteomics and its application to cancer tissue data analysis, Bioinformatics Program, Taiwan International Graduate Program, Academia Sinica, Feb. 27, 2020.
- iTop-Q: an intelligent top-down proteomics quantitation tool using DYAMOND algorithm for charge state deconvolution, Bioinformatics Program, Taiwan Internation Graduate Program, Academia Sinica. Mar. 22, 2018.
- User-friendly tools for proteomics: WinProphet for identification and Multi-Q for isobaric labeling quantitation, Fall Seminar, Taiwan Society of Mass Spectrometry, Academia Sinica. Oct. 20, 2017. (including hands-on training)
- Structure-based protein-protein interaction site predictions, Department of Mathematics, Fu-Jen Catholic University, Jun. 1, 2016.
- Protein-protein interaction site predictions with three-dimensional probability distributions of interacting atoms on protein surfaces, Computational Bioinformatics Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, Japan, Feb. 28, 2014.
- Protein-protein interaction site predictions with three-dimensional probability distributions of interacting atoms on protein surfaces, Graduate Institute of Biomedical Informatics, Taipei Medical University, Nov. 28, 2013.
Academic Service
- Reviewer, International Journal of Molecular Sciences (2024)
- Poster Judge, 2023 Annual Symposium of Taiwanese Society of Biomedical Engineering (TSBME 2023)
- Reviewer, Molecules (2022)
- Program committee member and session chair, IEEE International Conference on BioInformatics and BioEngineering (BIBE 2022)
- Reviewer, Asia Pacific Bioinformatics Conference (APBC 2017)
- Reviewer, IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2016)
- Reviewer, Asia Pacific Bioinformatics Conference (APBC 2015)
- Reviewer, IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2015)
- Reviewer, PLoS ONE (2014)
- Reviewer, Research in Computational Molecular Biology (RECOMB 2014)
- Reviewer, Asia Pacific Bioinformatics Conference (APBC 2014)
- Reviewer, Research in Computational Molecular Biology (RECOMB 2013)
- Reviewer, Asia Pacific Bioinformatics Conference (APBC 2013)
- Reviewer, IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2013)
MISC.
- 「醫療影像黑客松」評審委員,AI醫療專題實作營,愛奇智慧 (2022/7)。